Vol. 21: Supplement A

ARTICLES

• Editorial

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• COST Action BM1006 (SeqAhead) closing conference "Next Generation Sequencing: a look into the future”

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• Scientific Programme

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Keynote Lectures

• Power and limitations of RNA-Seq: findings from the SEQC (MAQC-III) Consortium

  Paweł Piotr Łabaj

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• Population-scale genomics with BiobankCloud and Hops/Hadoop

  Jim Dowling

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• Data deluge demands a training tsunami

  Eija Korpelainen

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Oral Presentations

• Reproducible Research in the era of Next Generation Sequencing: current approaches, examples and future perspectives

  Claudia Angelini, Dario Righelli, Francesco Russo

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• Current status of nanopore sequencing using the MinION device – from full length cDNA sequencing to genome assembly improvements

  Ola Wallerman

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• Deep insights into Mecp2-driven transcriptional (de)regulation at embryonic developmental stage through RNA-Seq data analysis

  Kumar Parijat Tripathi, Maurizio D'Esposito, Mario R Guarracino, Marcella Vacca

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• Exploring the activity of microorganisms in the forest soil using metatranscriptomics

  Petr Baldrian

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• Creating a successful facility for large-scale extraction of DNA, an example from the Swedish Biobank initiative BBMRI.se

  James Thompson

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• Using neural networks to filter predicted errors in NGS data

  Milko Krachunov, Ognyan Kulev, Maria Nisheva, Valeria Simeonova, Deyan Peychev, Dimitar Vassilev

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• DIANA-TarBase v7: indexing hundreds of thousands experimentally supported miRNA:mRNA interactions

  Dimitra Karagkouni

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• Biobanking for the future, how to prepare for the next generation of Next Generation Sequencing

  Tomas Klingström

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• Introducing Meta2genomics: the search for the “micro-bee”

  Jose R Valverde

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• Information-theoretic approach for detection of differential splicing from RNA-seq data

  Axel Rasche, Ralf Herwig

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• iMir: an innovative and complete pipeline for smallRNA-Seq data analysis

  Giorgio Giurato, Antonio Rinaldi, Adnan Hashim, Giovanni Nassa, Maria Ravo, Francesca Rizzo, Roberta Tarallo, Angela Cordella, Giovanna Marchese, Domenico Memoli, Alessandro Weisz

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Posters

• Microbial analysis of ovine cheese by next generation sequencing

  Vladimir Kmet, Dobroslava Bujnakova

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• PACMAN: PacBio Methylation Analyzer

  Laurent Falquet, Alexis Loetscher

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• NORM-SYS - harmonizing standardization processes for model and data exchange in systems biology

  Babette Regierer, Susanne Hollmann, Martin Golebiewski

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• Targeted amplicon sequencing in genetic diagnostics of patients with cystic fibrosis

  Jelena Kusic-Tisma, Aleksandra Divac Rankov, Mila Ljujic, Nadja Pejanovic, Bojana Stanic, Dragica Radojkovic

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• Reference leaf transcriptomes for potato cultivars: desiree and PW363

  Maja Zagorščak, Marko Petek, Mohamed Zouine, Kristina Gruden

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• NGS as a tool for investigating spread of zoonotic bacteria: dealing with source and outbreak genetic variation in a spatio-temporal context

  Robert Söderlund, Tomas Jinnerot, Adrien Janssens, Erik Bongcam-Rudloff

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• Biobanks and future emerging technologies: new approaches, new pre-analytical challenges

  Eva Ortega-Paino, Tomas Klingström, Johanna Ekström

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• MetLab: an in silico experimental design, simulation and validation tool for viral metagenomics studies

  Martin Norling, Oskar Erik Karlsson, Hadrien Gourlé, Erik Bongcam-Rudloff, Juliette Hayer

  e823

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• Towards SNP calling in polyploid genomes

  Anatoliy Dimitrov, Milko Krachunov, Ognyan Kulev, Jérôme Salse, Irena Avdjieva, Dimitar Vassilev

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• Gene set enrichment analysis of neuroendocrine system of the silkworm Bombyx mori

  Gabor Beke, Matej Stano, Ivana Daubnerova, Dusan Zitnan, Lubos Klucar

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• The NonCode aReNA DB: a non-redundant and integrated collection of non-coding RNAs

  Giorgio De Caro, Arianna Consiglio, Domenica D'Elia, Andreas Gisel, Giorgio Grillo, Sabino Liuni, Angelica Tulipano, Flavio Licciulli

  e834

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