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Vol. 19: Supplement B
Vol. 19: Supplement B
NETTAB 2013
Published:
2013-10-14
Entire issue
EMBnet.journal 19 Suppl. B
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ARTICLES
Editorial
p. 2
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Preface - NETTAB 2013 Workshop on “Semantic, Social, and Mobile Applications for Bioinformatics and Biomedical Laboratories”
pp. 3-4
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Conference Programme
pp. 7-10
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Keynote Lectures
Facilitating scientific discovery through crowdsourcing and distributed participation
Antony Williams
p. 12
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Semantic technologies for the automation of research in biomedicine
Ross D King
p. 13
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SCIMOBS: the million minds approach revisited in mobile context
Barend Mons
p. 14
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Tutorials
Semantic Web for Life Sciences: vision, aims, tools, platforms
Andrea Splendiani
p. 16
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Open_PHACTS and NanoPublications
Christine Chichester
p. 17
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Standards for Web Applications on Mobile: current state and roadmap
Dominique Hazaël-Massieux
p. 18
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Mobile applications for life sciences: perspectives, limitations, and real examples
Alex Clark
p. 19
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Oral Communications
Mobile applications driven by Open PHACTS semantic web technology
Christine Chichester, Lee Harald, Tim Harder
pp. 21-23
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TagCurate: crowdsourcing the verification of biomedical annotations to mobile users
Bahar Sateli, Sebastien Luong, René Witte
pp. 24-26
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iNGS: a prototype tool for genome interpretation and annotation
Ismael Navas-Delgado, Maria Jesús García Godoy, Fátima Arjona-Pulido, Trinidad Castillo-Castillo, Ana Isabel Ramos-Ostio, José F. Aldana-Montes
pp. 27-31
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The OntoGene literature mining web service
Fabio Rinaldi
pp. 32-35
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Extracting more value from data silos: using the semantic web to link chemistry and biology for innovation
Tim P Eyres
pp. 36-39
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Sprints, Hackathons and Codefests as community gluons in computational biology
Steffen Möller, Enis Afgan, Michael Banck, Peter J. A. Cock, Matus Kalas, Laszlo Kajan, Pjotr Prins, Jacqueline Quinn, Olivier Sallou, Francesco Strozzi, Torsten Seemann, Andreas Tille, Roman Valls Guimera, Toshiaki Katayama, Brad Chapman
pp. 40-42
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Taverna Mobile: Taverna workflows on Android
Hyde Zhang, Stian Soiland-Reyes, Carole Goble
pp. 43-45
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Bio-GraphIIn: a graph-based, integrative and semantically-enabled repository for life science experimental data
Alejandra Gonzalez-Beltran, Eamonn Maguire, Pavlos Georgiou, Susanna-Assunta Sansone, Philippe Rocca-Serra
pp. 46-50
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An ontology based query engine for querying biological sequences
Martijn Devisscher, Tim De Meyer, Wim Van Criekinge, Peter Dawyndt
pp. 51-55
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The representation of biomedical protocols
Larisa N. Soldatova, Ross D. King, Piyali S. Basu, Emma Haddi, Nigel Saunders
pp. 56-58
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The role of parallelism, web services and ontologies in bioinformatics and omics data management and analysis
Mario Cannataro, Pietro Hiram Guzzi
pp. 59-62
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Posters
SstmpDB: a database of single-spanning transmembrane proteins
Olga Bejleri, Zoi Litou, Stavros Hamodrakas
pp. 64-65
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Sinergy: how semantics can improve early prevention of skin cancers
Diletta Romana Cacciagrano, Flavio Corradini, Leonardo Vito, Laura Cavalieri
pp. 66-69
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JavaEE for breakfast: start off on the right foot developing biological Web applications.
Arnaud Ceol, Heiko Muller
pp. 70-72
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Describing the genes social networks relying on chromosome conformation capture data
Ivan Merelli, Pietro Liò, Luciano Milanesi
pp. 73-75
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An ontology describing congenital heart defects data
Charalampos Moschopoulos, Jeroen Breckpot, Yves Moreau
pp. 76-78
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Towards a semantic wiki for human and animal cell lines
Paolo DM Romano, Dan M Bolser
pp. 79-81
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SEBSem: simple and efficient biomedical semantic relatedness measure
Maciej Rybinski, José Francisco Aldana-Montes
pp. 82-84
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SLIMS: a LIMS for handling next-generation sequencing workflows
Francesco Venco, Arnaud Ceol, Heiko Muller
pp. 85-87
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