Biologist-friendly analysis software for NGS data

Authors

  • Aleksi Kallio CSC – IT Center for Science, Helsinki
  • Taavi Hupponen CSC – IT Center for Science, Helsinki
  • Massimiliano Gentile Blueprint Genetics Oy, Helsinki
  • Jarno Tuimala SPR Veripalvelu, Helsinki
  • Kimmo Mattila CSC – IT Center for Science, Helsinki
  • Ari-Matti Saren CSC – IT Center for Science, Helsinki
  • Petri Klemelä CSC – IT Center for Science, Helsinki
  • Ilari Scheinin VU University Medical Center
  • Eija Korpelainen CSC – IT Center for Science, Helsinki

DOI:

https://doi.org/10.14806/ej.19.A.623

Keywords:

next generation sequencing, user interface, workflow, genome browser

Abstract

Chipster software provides a clear and biologist-friendly interface to analysis tools for NGS data. It has a graphical user interface that connects to server environment for heavy data processing. Chipster is a free and open source software, and it is available as a virtual machine for easy server installation.

Downloads

Additional Files

Published

2013-04-08

Issue

Vol. 19: Supplement A

Section

Posters

License

Authors who publish with this journal agree to the following terms:
  1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
  2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
  3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).